STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0365UDP-glucose 6-dehydrogenase UdgA. (443 aa)    
Predicted Functional Partners:
RN08_1109
UTP--glucose-1-phosphate uridylyltransferase.
 
 0.987
RN08_4007
UDP-glucose 4-epimerase.
 0.979
RN08_3828
dTDP-glucose 4,6-dehydratase.
 
 0.974
RN08_0560
UDP-glucose 4-epimerase GalE.
  
 0.967
RN08_0376
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.966
RN08_3824
dTDP-glucose 4,6-dehydratase.
  
  
 0.878
RN08_3825
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.862
RN08_1692
Hypothetical protein.
  
  
 0.850
RN08_4203
UDP-galactopyranose mutase.
  
  
 0.834
RN08_0692
Hypothetical protein.
    
 0.830
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.