Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0366Hypothetical protein. (223 aa)    
Predicted Functional Partners:
RN08_2361
cysteine:1D-myo-inosityl 2-amino-2-deoxy--D-glucopyranoside ligase.
 
 
 0.750
RN08_0367
Transcriptional regulator.
     
 0.598
RN08_3958
cysteine--tRNA ligase.
  
 
 0.595
RN08_0540
D-inositol 3-phosphate glycosyltransferase.
 
 
 0.583
RN08_0368
Hypothetical protein.
  
  
 0.573
RN08_3458
Histidinol-phosphatase.
     
 0.546
RN08_1772
Histidinol dehydrogenase.
    
  0.545
RN08_4256
RNase E regulator RraA.
    
 0.499
RN08_0915
Mycothiol acetyltransferase.
 
   
 0.488
RN08_3678
N-acetylglucosamine-6-phosphate deacetylase NagA.
    
 0.485
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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