STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0374Hypothetical protein. (261 aa)    
Predicted Functional Partners:
RN08_0375
Hypothetical protein.
  
    0.880
RN08_0376
Glucose-1-phosphate thymidylyltransferase.
     
 0.831
RN08_0377
PE family protein PE6.
       0.675
RN08_0378
Hypothetical protein.
 
     0.596
RN08_0373
Dehydrogenase/reductase.
       0.592
RN08_0365
UDP-glucose 6-dehydrogenase UdgA.
       0.536
RN08_1047
Bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/cyclase/dehydrase.
  
  
  0.529
RN08_0528
HTH-type transcriptional regulator.
 
 
 0.508
RN08_2748
Bifunctional L-3-phosphoserine phosphatase/1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.500
RN08_1049
Hypothetical protein.
  
     0.473
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.