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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0486ATPase. (323 aa)    
Predicted Functional Partners:
RN08_0487
ATPase.
    
0.972
RN08_2345
Proteasome-associated ATPase.
 
  0.801
RN08_4074
Glycerol kinase.
  
  0.772
RN08_2338
Proteasome subunit beta.
  
 0.770
RN08_1510
Iron ABC transporter ATP-binding protein/permease IrtB.
 
 0.759
RN08_2024
Vitamin B12 transport ATP-binding protein BacA.
  
  
 0.755
RN08_1425
Drug ABC transporter ATP-binding protein.
 
 
 0.751
RN08_1508
Iron ABC transporter ATP-binding protein/permease IrtA.
 
 
 0.734
RN08_2544
Chaperone protein HtpG.
   
 0.734
RN08_2337
Proteasome subunit alpha.
   
 0.731
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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