STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0500Hypothetical protein. (243 aa)    
Predicted Functional Partners:
RN08_0499
Cyclopropane-fatty-acyl-phospholipid synthase UfaA.
  
 0.992
RN08_0501
Hypothetical protein.
  
 0.989
RN08_0498
Transmembrane protein.
 
     0.969
RN08_0497
ECF RNA polymerase sigma factor SigK.
 
   
 0.830
RN08_0496
anti-sigma-K factor RskA.
 
     0.801
RN08_0502
Transmembrane transport protein MmpL4.
       0.619
RN08_0503
Membrane protein MmpS4.
       0.588
RN08_3742
Cyclopropane mycolic acid synthase CmaA.
  
 0.539
RN08_4102
Fatty acid synthase.
  
 0.536
RN08_0718
Methoxy mycolic acid synthase MmaA3.
  
 0.483
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.