STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0526HTH-type transcriptional regulator. (256 aa)    
Predicted Functional Partners:
RN08_0525
Hypothetical protein.
       0.874
RN08_0529
Heparin binding hemagglutinin HbhA.
 
     0.717
RN08_0527
Transmembrane protein.
       0.664
RN08_0273
3-hydroxyacyl-thioester dehydratase HtdX.
 
     0.616
RN08_0524
Hypothetical protein.
       0.615
RN08_0530
Transmembrane protein.
 
     0.609
RN08_2040
Hypothetical protein.
  
     0.596
RN08_0556
Hypothetical protein.
  
     0.575
RN08_0282
Hypothetical protein.
  
     0.549
RN08_2033
HTH-type transcriptional regulator.
      
 0.530
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.