STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0531Hypothetical protein. (148 aa)    
Predicted Functional Partners:
RN08_0532
Deoxyribose-phosphate aldolase.
  
    0.875
RN08_0530
Transmembrane protein.
       0.874
RN08_0529
Heparin binding hemagglutinin HbhA.
 
   
 0.844
RN08_0528
HTH-type transcriptional regulator.
  
    0.661
RN08_0325
ESX-3 secretion system protein EccB3.
 
  0.639
RN08_3221
Hypothetical protein.
 
    0.526
RN08_3747
GMP synthase.
    
  0.517
RN08_2695
Alkyl hydroperoxide reductase AphD.
  
     0.513
RN08_0071
Cellulase CelA.
 
  
 0.507
RN08_4107
Cutinase Cut5b.
 
     0.507
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.