STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0560UDP-glucose 4-epimerase GalE. (376 aa)    
Predicted Functional Partners:
RN08_4203
UDP-galactopyranose mutase.
  
 
 0.982
RN08_0365
UDP-glucose 6-dehydrogenase UdgA.
  
 0.967
RN08_0561
Hypothetical protein.
 
  
 0.966
RN08_0692
Hypothetical protein.
   
 
 0.957
RN08_1109
UTP--glucose-1-phosphate uridylyltransferase.
  
 
 0.942
RN08_4007
UDP-glucose 4-epimerase.
  
  
  0.922
RN08_3828
dTDP-glucose 4,6-dehydratase.
  
  
  0.919
RN08_0785
30S ribosomal protein S19.
   
  0.843
RN08_0761
30S ribosomal protein S12.
   
 0.838
RN08_0787
30S ribosomal protein S3.
   
 0.833
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.