STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0569glutamyl-tRNA reductase. (468 aa)    
Predicted Functional Partners:
RN08_0586
Glutamate-1-semialdehyde 2,1-aminomutase.
 
 0.999
RN08_0570
Porphobilinogen deaminase.
  
 0.998
RN08_3301
glutamate--tRNA ligase.
     
 0.997
RN08_0573
Delta-aminolevulinic acid dehydratase.
 
  
 0.982
RN08_0571
uroporphyrin-III C-methyltransferase; Overlaps another CDS with the same product name.
 
 
 0.978
RN08_0572
uroporphyrin-III C-methyltransferase; Overlaps another CDS with the same product name.
 
 
 0.974
RN08_3138
Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase.
 
 
 0.940
RN08_2963
Uroporphyrinogen decarboxylase.
 
  
 0.862
RN08_0568
Hypothetical protein.
     
 0.807
RN08_0591
Cytochrome C-type biogenesis protein CcsA.
 
  
 0.757
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.