Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RN08_05971,4-dihydroxy-2-naphthoate octaprenyltransferase. (286 aa)    
Predicted Functional Partners:
RN08_0624
Demethylmenaquinone methyltransferase.
    
 0.986
RN08_2052
Esterase.
 
  
 0.945
RN08_2617
Decaprenyl diphosphate synthase.
     
 0.875
RN08_0614
1,4-dihydroxy-2-naphthoyl-CoA synthase.
 
   
 0.826
RN08_0621
Bifunctional 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase/2-oxoglutarate decarboxylase.
 
   
 0.819
RN08_0598
S-methyl-5'-thioadenosine phosphorylase.
       0.763
RN08_0599
UDP-glucose 4-epimerase GalE.
       0.763
RN08_0596
3-oxoacyl-[acyl-carrier-protein] synthase III.
       0.757
RN08_0619
Muconate cycloisomerase.
 
   
 0.698
RN08_1939
Isopentenyl-diphosphate delta-isomerase.
    
 0.567
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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