STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0622Transmembrane protein. (171 aa)    
Predicted Functional Partners:
RN08_0621
Bifunctional 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase/2-oxoglutarate decarboxylase.
       0.874
RN08_0623
GDP-mannose-dependent alpha-mannosyltransferase.
       0.872
RN08_0620
Non-heme bromoperoxidase BpoC.
       0.813
RN08_0624
Demethylmenaquinone methyltransferase.
       0.781
RN08_1245
Hypothetical protein.
  
     0.774
RN08_2714
Integral membrane protein.
  
     0.774
RN08_3800
Hypothetical protein.
  
     0.774
RN08_4253
Hypothetical protein.
  
     0.774
RN08_3017
Transmembrane protein.
  
     0.773
RN08_3536
Hypothetical protein.
  
     0.773
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.