Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0664Mce family protein Mce2D. (508 aa)    
Predicted Functional Partners:
RN08_0663
Mce family protein Mce2C.
 
 
 0.998
RN08_0665
Mce family lipoprotein LprL.
 
 
 0.998
RN08_0662
Mammalian cell entry protein.
 
 
 0.991
RN08_0659
Hypothetical protein.
 
 0.989
RN08_0661
Mce family protein Mce2A.
 
 
 0.989
RN08_0660
Hypothetical protein.
 
 0.983
RN08_0195
Mce family protein Mce1C.
 
 
 0.978
RN08_0191
Membrane protein.
 
 0.973
RN08_3858
Integral membrane protein.
 
 0.969
RN08_0197
Mce family lipoprotein LprK.
 
 
 0.958
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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