STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0677Lipoprotein LpqO. (308 aa)    
Predicted Functional Partners:
RN08_0676
Hypothetical protein.
  
    0.809
RN08_1311
Transcriptional regulator.
   
    0.707
RN08_3394
HTH-type transcriptional regulator VirS.
  
    0.682
RN08_1857
HTH-type transcriptional regulator Cmr.
  
    0.665
RN08_1334
Hypothetical protein.
   
    0.646
RN08_2145
Transcriptional regulator; Overlaps another CDS with the same product name.
  
    0.622
RN08_1291
NAD-dependent protein deacylase.
   
    0.613
RN08_1333
ECF RNA polymerase sigma factor SigI.
  
    0.613
RN08_0504
Transcriptional regulator.
   
    0.612
RN08_0550
HTH-type transcriptional regulator.
   
    0.611
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.