STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0730Carotenoid cleavage oxygenase. (501 aa)    
Predicted Functional Partners:
RN08_0729
Transcriptional regulator.
       0.780
RN08_0985
Hypothetical protein.
      
 0.657
RN08_2024
Vitamin B12 transport ATP-binding protein BacA.
  
  
  0.649
RN08_1014
Hypothetical protein.
      
 0.647
RN08_1555
Guanylate kinase.
   
 
  0.618
RN08_0731
Ribonucleotide ABC transporter ATP-binding protein.
       0.605
RN08_1018
Lipid carrier protein or keto acyl-CoA thiolase.
 
    0.584
RN08_0469
Lipoprotein aminopeptidase LpqL.
   
 
  0.540
RN08_1971
Hypothetical protein.
   
 
  0.540
RN08_2456
Cytosol aminopeptidase.
     
 0.531
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.