Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0764Elongation factor Tu. (396 aa)    
Predicted Functional Partners:
RN08_0761
30S ribosomal protein S12.
 
 0.997
RN08_0762
30S ribosomal protein S7.
 
 0.997
RN08_3183
Elongation factor EF-Ts.
  
 0.996
RN08_0780
30S ribosomal protein S10.
 0.995
RN08_0715
50S ribosomal protein L11.
 
 0.994
RN08_0786
50S ribosomal protein L22.
 
 0.994
RN08_0781
50S ribosomal protein L3.
 
 0.993
RN08_0782
50S ribosomal protein L4.
 
 0.993
RN08_0784
50S ribosomal protein L2.
 
 0.993
RN08_0801
30S ribosomal protein S5.
 
 0.993
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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