STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0792Hypothetical protein. (299 aa)    
Predicted Functional Partners:
RN08_0791
Arylsulfatase AtsA.
 
   0.972
RN08_4081
Histidine-specific methyltransferase EtgD.
 
 
 0.866
RN08_3640
Arylsulfatase AtsB.
 
   0.847
RN08_0739
Arylsulfatase AtsD.
 
   0.842
RN08_0338
Sulfatase.
 
   0.829
RN08_2670
Ribonuclease Z.
 
   
 0.718
RN08_4084
Glutamate--cysteine ligase.
  
 
 0.703
RN08_0538
Short-chain type oxidoreductase.
     
 0.658
RN08_3537
Hypothetical protein.
      
 0.657
RN08_1190
Hypothetical protein.
  
 
 0.629
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.