STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_08604-carboxymuconolactone decarboxylase. (143 aa)    
Predicted Functional Partners:
RN08_0859
Oxidoreductase.
 
 
 0.978
RN08_0857
Aldehyde dehydrogenase AldA.
 
 
 0.919
RN08_0853
Lanosterol 14-alpha demethylase.
 
  
 0.918
RN08_0851
Hypothetical protein.
 
    0.914
RN08_0861
Phosphoribosylamine--glycine ligase.
       0.863
RN08_0852
Ferredoxin.
 
    0.840
RN08_0858
Oxidoreductase.
 
  
 0.830
RN08_0854
Oxidoreductase.
 
  
 0.824
RN08_0856
HTH-type transcriptional regulator.
 
     0.816
RN08_0355
Hypothetical protein.
 
     0.801
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.