Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN08_0871Protease. (719 aa)    
Predicted Functional Partners:
RN08_2727
ATP-dependent CLP protease proteolytic subunit 1.
   
  
 0.872
RN08_0870
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
       0.866
RN08_0869
Transmembrane protein.
       0.773
RN08_4098
Hypothetical protein.
  
  
 0.707
RN08_2726
ATP-dependent CLP protease proteolytic subunit 2.
   
  
 0.696
RN08_0866
Adenylosuccinate lyase PurB; Overlaps another CDS with the same product name.
       0.648
RN08_0867
Adenylosuccinate lyase PurB; Overlaps another CDS with the same product name.
       0.648
RN08_0868
Cytochrome P450 Cyp126.
       0.616
RN08_3520
Hypothetical protein.
   
  
 0.597
RN08_1923
Hypothetical protein.
 
      0.468
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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