STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0875Hypothetical protein. (228 aa)    
Predicted Functional Partners:
RN08_0877
KsdD-like steroid dehydrogenase; Overlaps another CDS with the same product name.
       0.807
RN08_0876
KsdD-like steroid dehydrogenase; Overlaps another CDS with the same product name.
       0.769
RN08_0874
Multidrug resistance protein EmrB.
       0.755
RN08_0529
Heparin binding hemagglutinin HbhA.
  
    0.702
RN08_4199
Terminal beta-(1->2)-arabinofuranosyltransferase.
 
     0.695
RN08_4253
Hypothetical protein.
  
     0.686
RN08_0622
Transmembrane protein.
  
     0.675
RN08_0365
UDP-glucose 6-dehydrogenase UdgA.
      
 0.657
RN08_2597
Hypothetical protein.
  
     0.642
RN08_3800
Hypothetical protein.
  
     0.636
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.