Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0890Hypothetical protein. (335 aa)    
Predicted Functional Partners:
RN08_0889
Hypothetical protein.
 
 
 
 0.998
RN08_0891
M18 family aminopeptidase.
       0.762
RN08_0892
Hypothetical protein.
     
 0.694
RN08_0459
Phosphate acetyltransferase.
    
 0.572
RN08_1463
ATP synthase subunit b/delta.
 
  
 0.526
RN08_2961
Protoporphyrinogen oxidase; Overlaps another CDS with the same product name.
     
 0.492
RN08_2962
Protoporphyrinogen oxidase; Overlaps another CDS with the same product name.
     
 0.492
RN08_3962
Lipoprotein LpqE.
  
  
 0.478
RN08_2321
Sec-independent protein translocase transmembrane protein TatC.
     
 0.423
RN08_1367
Sec-independent protein translocase protein TatB.
     
 0.418
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.