STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0898Exopolysaccharide phosphotransferase CpsY. (532 aa)    
Predicted Functional Partners:
RN08_1485
1,4-alpha-glucan branching protein.
   
 0.801
RN08_1751
Malto-oligosyltrehalose trehalohydrolase.
   
 0.801
RN08_4203
UDP-galactopyranose mutase.
  
 
 0.794
RN08_0897
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
  
  
 0.762
RN08_0132
D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
  
 0.660
RN08_2804
Hypothetical protein.
   
 0.657
RN08_0376
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.639
RN08_3379
Phosphoglucomutase PgmA.
   
 0.624
RN08_0692
Hypothetical protein.
 
  
 0.603
RN08_3600
D-alpha-D-mannose-1-phosphate guanylyltransferase ManB.
  
 0.591
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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