Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0905Hypothetical protein. (173 aa)    
Predicted Functional Partners:
RN08_0904
Hypothetical protein.
     0.992
RN08_2445
Hypothetical protein.
 
 
 0.721
RN08_2036
Glycine dehydrogenase.
     
 0.681
RN08_2439
Cytochrome c oxidase polypeptide 4.
  
     0.680
RN08_2381
Transmembrane protein.
  
     0.678
RN08_3328
Hypothetical protein.
  
  
  0.675
RN08_2354
Methionine synthase.
     
  0.669
RN08_2505
Hypothetical protein.
  
     0.669
RN08_2675
Hypothetical protein.
  
    0.660
RN08_0907
Amino acid aminotransferase; Overlaps another CDS with the same product name.
 
     0.641
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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