Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0927Hypothetical protein. (137 aa)    
Predicted Functional Partners:
RN08_0802
50S ribosomal protein L30.
   
  0.702
RN08_2834
alanine--tRNA ligase.
  
 0.687
RN08_0726
50S ribosomal protein L10.
   
 0.650
RN08_0781
50S ribosomal protein L3.
    
 0.649
RN08_2330
Helicase HelZ.
   
 0.649
RN08_0013
Iron-regulated peptidyl-prolyl cis-trans isomerase PpiA.
   
  0.646
RN08_2861
Peptidyl-prolyl cis-trans isomerase B.
   
  0.646
RN08_0783
50S ribosomal protein L23.
    
 0.644
RN08_0796
50S ribosomal protein L5.
   
  0.643
RN08_0799
50S ribosomal protein L6.
    
  0.642
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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