Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0945MFS-type transporter. (419 aa)    
Predicted Functional Partners:
RN08_0944
Cysteine synthase CysK.
 
  
 0.992
RN08_0946
Transposase.
  
  
 0.973
RN08_0942
Oxidase.
  
  
 0.867
RN08_0943
Lipoprotein LpqS.
  
  
 0.841
RN08_3266
Integral membrane protein.
  
  
 0.779
RN08_2972
Antibiotic ABC transporter permease.
  
 
   0.649
RN08_2971
Antibiotic ABC transporter permease.
  
     0.627
RN08_2185
Hypothetical protein.
  
  
  0.617
RN08_3239
Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name.
 
   
 0.578
RN08_3419
Proline-rich protein.
  
 0.499
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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