STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0954N-succinyldiaminopimelate aminotransferase DapC. (310 aa)    
Predicted Functional Partners:
RN08_1344
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
  
 
 0.994
RN08_1345
Succinyl-diaminopimelate desuccinylase DapE.
    
 0.994
RN08_1834
Acetylornithine aminotransferase.
  
 
 0.910
RN08_4091
Aspartokinase.
  
 0.819
RN08_3011
Diaminopimelate epimerase.
 
 0.779
RN08_1558
S-adenosylmethionine synthetase.
  
 0.756
RN08_1447
Diaminopimelate decarboxylase.
  
 
 0.685
RN08_1233
Fumarate hydratase.
   
 0.634
RN08_0534
Amidohydrolase.
  
 
 0.625
RN08_1448
Homoserine dehydrogenase.
  
 0.620
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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