STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0958Hypothetical protein. (756 aa)    
Predicted Functional Partners:
RN08_0957
DNA helicase Ercc3.
 
     0.918
RN08_2340
Pup deamidase/depupylase.
  
  
 0.784
RN08_0959
Hypothetical protein.
       0.783
RN08_0961
Molybdopterin biosynthesis protein.
       0.780
RN08_0962
Molybdopterin synthase catalytic subunit 2.
       0.780
RN08_2488
Pyruvate dehydrogenase E1 component.
     
 0.670
RN08_0960
Cyclic pyranopterin monophosphate synthase accessory protein 2.
       0.602
RN08_3604
Hypothetical protein.
  
     0.589
RN08_1379
Transmembrane protein; Overlaps another CDS with the same product name.
 
    0.567
RN08_3526
ATP-dependent DNA helicase UvrD.
 
   
 0.548
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.