Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0975Hypothetical protein. (103 aa)    
Predicted Functional Partners:
RN08_0974
Hypothetical protein.
     0.994
RN08_0972
Hypothetical protein.
 
     0.705
RN08_4037
Hypothetical protein.
  
     0.641
RN08_3473
NADH-quinone oxidoreductase subunit G; Overlaps another CDS with the same product name.
  
     0.605
RN08_4038
Hypothetical protein.
  
     0.604
RN08_0009
Membrane protein.
  
     0.525
RN08_3464
Response regulator.
 
     0.523
RN08_0973
Transmembrane protein.
       0.521
RN08_2274
Polyprenol-monophosphomannose synthase.
  
     0.507
RN08_3532
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
  
     0.501
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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