STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0979tRNA/rRNA methyltransferase. (288 aa)    
Predicted Functional Partners:
RN08_0980
Transmembrane protein.
 
     0.889
RN08_0978
HTH-type transcriptional regulator.
       0.874
RN08_0977
Membrane protein.
       0.760
RN08_2322
Sec-independent protein translocase membrane-bound protein TatA.
     
 0.682
RN08_1877
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
 
   
 0.673
RN08_2683
Hypothetical protein.
   
 
 0.658
RN08_3817
50S ribosomal protein L17.
  
 
 0.650
RN08_3805
50S ribosomal protein L13.
  
 
 0.639
RN08_2709
50S ribosomal protein L21.
   
   0.635
RN08_0803
50S ribosomal protein L15.
  
   0.633
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.