Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0987Hypothetical protein. (490 aa)    
Predicted Functional Partners:
RN08_3755
Hypothetical protein.
  
    0.753
RN08_1644
Cobalt/nickel-exporting P-type ATPase.
  
    0.715
RN08_0356
Hypothetical protein.
  
    0.686
RN08_1224
Glycosyl hydrolase family 12.
 
     0.665
RN08_0372
Hypothetical protein.
  
    0.656
RN08_2129
PPE family protein PPE34.
  
     0.642
RN08_0399
PPE family protein PPE8.
  
     0.639
RN08_3696
PPE family protein PPE56; Overlaps another CDS with the same product name.
  
     0.637
RN08_1001
Peptidoglycan-binding protein ArfA.
   
  
 0.632
RN08_0347
PPE family protein PPE5.
  
     0.621
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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