STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0988Citrate synthase 2. (318 aa)    
Predicted Functional Partners:
RN08_3144
Malate:quinone oxidoreductase.
  
 
 0.995
RN08_1387
Malate dehydrogenase; Overlaps another CDS with the same product name.
  
 0.992
RN08_1653
Iron-regulated aconitate hydratase.
 
 0.991
RN08_1651
Iron-regulated aconitate hydratase.
 
 0.990
RN08_1396
Multifunctional 2-oxoglutarate dehydrogenase E1 component /2-oxoglutarate dehydrogenase dihydrolipoyllysine-residue succinyltransferase.
  
 0.987
RN08_2721
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.977
RN08_4043
acetyl-CoAsynthetase.
  
 0.974
RN08_2766
Branched-chain keto acid dehydrogenase E2 component.
  
 0.971
RN08_2041
Malate synthase.
  
 0.962
RN08_0998
Citrate synthase 1.
 
  
 
0.956
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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