Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1001Peptidoglycan-binding protein ArfA. (326 aa)    
Predicted Functional Partners:
RN08_1003
Membrane protein; Overlaps another CDS with the same product name.
 
   
 0.927
RN08_1002
Membrane protein; Overlaps another CDS with the same product name.
     
 0.874
RN08_1000
Hypothetical protein.
       0.752
RN08_0999
Oxidoreductase.
       0.655
RN08_3798
Glucosamine--fructose-6-phosphate aminotransferase.
  
 
 0.644
RN08_0987
Hypothetical protein.
   
  
 0.632
RN08_1463
ATP synthase subunit b/delta.
  
  
 0.612
RN08_0386
Isoniazid inducible protein IniB.
 
 
 0.591
RN08_2843
Glutamine ABC transporter ATP-binding protein.
 
 
 0.591
RN08_0086
Glutamine ABC transporter ATP-binding protein.
 
 
 0.588
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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