STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1001Peptidoglycan-binding protein ArfA. (326 aa)    
Predicted Functional Partners:
RN08_1003
Membrane protein; Overlaps another CDS with the same product name.
 
   
 0.960
RN08_1002
Membrane protein; Overlaps another CDS with the same product name.
     
 0.921
RN08_3419
Proline-rich protein.
   
 0.816
RN08_1000
Hypothetical protein.
       0.774
RN08_0999
Oxidoreductase.
       0.684
RN08_3798
Glucosamine--fructose-6-phosphate aminotransferase.
  
 
 0.621
RN08_0062
30S ribosomal protein S6.
  
   0.617
RN08_3145
PE-PGRS family protein PE_PGRS48.
 
 
 0.611
RN08_0065
50S ribosomal protein L9.
 
 
 0.584
RN08_0987
Hypothetical protein.
  
  
 0.572
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.