STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1007enoyl-CoA hydratase EchA6. (243 aa)    
Predicted Functional Partners:
RN08_1203
enoyl-CoA hydratase EchA9.
 
  
 0.912
RN08_1008
Hypothetical protein.
  
    0.889
RN08_1082
acyl-CoA dehydrogenase FadE12.
  
 0.876
RN08_2151
enoyl-CoA hydratase EchA13.
 
  
 0.870
RN08_2771
acyl-CoA dehydrogenase FadE19.
  
 0.869
RN08_1276
enoyl-CoA hydratase.
 
  
 0.858
RN08_2269
Polyketide synthase.
  
 0.854
RN08_1010
Metal cation transporter ATPase E.
   
   0.844
RN08_0521
3-hydroxybutyryl-CoA dehydrogenase.
 0.835
RN08_2798
Fatty acid synthase.
  
 0.814
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.