STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1022Glycine betaine transport integral membrane protein BetP. (593 aa)    
Predicted Functional Partners:
RN08_1023
Hypothetical protein.
       0.808
RN08_4160
Histidinol-phosphate aminotransferase.
   
  
 0.663
RN08_1917
Oxidoreductase.
     
 0.659
RN08_3035
Hypothetical protein.
     
 0.659
RN08_1569
Methyltransferase.
     
 0.528
RN08_1025
GCN5-like N-acetyltransferase.
     
 0.526
RN08_0848
Hypothetical protein.
      
 0.525
RN08_0001
Chromosomal replication initiator protein DnaA.
   
  
 0.522
RN08_3677
Sugar-transport integral membrane protein SugI.
      
 0.520
RN08_1024
Hypothetical protein.
       0.513
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.