STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1027Resolvase. (193 aa)    
Predicted Functional Partners:
RN08_1028
Transposase.
 
  
 0.956
RN08_4225
Transposase.
 
  
 0.799
RN08_3179
Transposase.
 
  
 0.798
RN08_3078
Transposase.
 
  
 0.797
RN08_3286
Transposase.
 
  
 0.795
RN08_0679
Transposase.
 
  
 0.791
RN08_3287
Resolvase.
   
    0.711
RN08_4226
Resolvase.
   
    0.611
RN08_3079
Resolvase.
   
    0.552
RN08_3285
Thiamine-monophosphate kinase.
   
    0.548
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.