STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1045Non-homologous end joining protein Ku. (273 aa)    
Predicted Functional Partners:
RN08_1046
Multifunctional non-homologous end joining DNA repair protein/ATP dependent DNA ligase LigD.
 
  
 0.990
RN08_4115
DNA ligase C.
 
  
 0.949
RN08_4114
Hypothetical protein.
 
  
 0.920
RN08_0301
Hypothetical protein.
 
  
 0.897
RN08_3373
DNA ligase.
 
  
 0.860
RN08_1055
ATP-dependent DNA helicase UvrD.
     
 0.840
RN08_1047
Bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/cyclase/dehydrase.
       0.591
RN08_3531
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
    
 0.523
RN08_3532
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
    
 0.523
RN08_3526
ATP-dependent DNA helicase UvrD.
     
 0.423
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.