Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1102Adhesion component ABC transporter permease. (140 aa)    
Predicted Functional Partners:
RN08_1101
Adhesion component ABC transporter permease.
     0.988
RN08_1103
Hypothetical protein.
 
  
 0.986
RN08_1099
Adhesion component ABC transporter ATP-binding protein.
 
 
 0.835
RN08_0430
Chaperone protein ClpB.
  
    0.687
RN08_0086
Glutamine ABC transporter ATP-binding protein.
  
 
 0.630
RN08_2843
Glutamine ABC transporter ATP-binding protein.
  
 
 0.630
RN08_2593
Molybdopterin biosynthesis protein MoeW.
  
     0.506
RN08_2109
Lipoprotein LppD.
   
   0.406
RN08_0579
Hypothetical protein.
   
   0.405
RN08_1207
Hypothetical protein.
   
   0.405
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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