STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1129Resuscitation-promoting factor RpfB. (362 aa)    
Predicted Functional Partners:
RN08_1130
rRNA small subunit methyltransferase A.
  
  
 0.990
RN08_1128
Deoxyribonuclease TatD.
     
 0.904
RN08_1655
Peptidoglycan endopeptidase RipA.
  
  
 0.826
RN08_1131
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
     
 0.812
RN08_2092
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
   
  
 0.648
RN08_0031
NLP/P60 family protein.
  
  
 0.643
RN08_2440
Cytochrome C oxidase subunit II.
      
 0.611
RN08_1755
Hypothetical protein.
  
  
 0.593
RN08_1127
methionine--tRNA ligase.
       0.577
RN08_3604
Hypothetical protein.
  
     0.554
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.