STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1133peptidyl-tRNA hydrolase. (191 aa)    
Predicted Functional Partners:
RN08_1134
50S ribosomal protein L25.
 
  
 0.939
RN08_3321
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
 
 
  0.933
RN08_3324
glutamyl-tRNA(GLN) amidotransferase subunit C.
  
 
  0.922
RN08_3323
glutamyl-tRNA(GLN) amidotransferase subunit A.
    
  0.917
RN08_1248
GTP-binding protein.
 
  
 0.865
RN08_1454
Peptide chain release factor PrfA.
 
   
 0.843
RN08_1135
Lipoprotein LpqT.
       0.723
RN08_2667
GTP-binding protein LepA.
 
  
 0.700
RN08_3176
Ribosome recycling factor.
 
  
 0.689
RN08_3421
Peptide chain release factor PrfB.
 
  
 0.686
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.