STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1153Sensor protein KdpD; Overlaps another CDS with the same product name. (130 aa)    
Predicted Functional Partners:
RN08_1152
Sensor protein KdpD; Overlaps another CDS with the same product name.
     0.993
RN08_1154
Sensor protein KdpD; Overlaps another CDS with the same product name.
     0.984
RN08_1151
Transcriptional regulator KdpE.
 
 0.958
RN08_1159
Potassium-transporting ATPase subunit C.
  
  
 0.891
RN08_1158
Potassium-transporting ATPase subunit B.
 
  
 0.878
RN08_1157
Potassium-transporting ATPase subunit A.
  
  
 0.837
RN08_1162
Two component transcriptional regulator TrcR.
  
 0.710
RN08_3582
Two component DNA-binding response regulator MtrA.
  
 0.699
RN08_1005
Two component transcriptional regulator PrrA.
  
 0.676
RN08_1156
Membrane protein KdpF.
     
 0.625
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.