STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1217(2Z,6E)-farnesyl diphosphate synthase. (262 aa)    
Predicted Functional Partners:
RN08_2410
Geranylgeranyl pyrophosphate synthetase IdsA.
 
 
 0.983
RN08_3730
Polyprenyl synthetase IdsB.
 
 
 0.983
RN08_3749
Multifunctional dimethylallyltransferase/geranyltranstransferase/farnesyl transtransferase.
 
 
 0.983
RN08_1939
Isopentenyl-diphosphate delta-isomerase.
  
 
 0.961
RN08_2617
Decaprenyl diphosphate synthase.
  
  
0.959
RN08_1246
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
    
 0.907
RN08_3729
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
    
 0.907
RN08_0628
Polyprenyl-diphosphate synthase GrcC.
 
 
 0.869
RN08_1218
Short (C15) chain Z-isoprenyl diphosphate synthase (Z-FPP synthase) (Z-farnesyl diphosphate synthase) (Z-FPP synthetase) (Z-farnesyl diphosphate synthetase) (geranyltranstransferase) (farnesyl pyrophosphate synthetase).
       0.783
RN08_3175
Phosphatidate cytidylyltransferase.
  
  
 0.714
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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