STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_12606-phosphogluconate dehydrogenase. (340 aa)    
Predicted Functional Partners:
RN08_1616
6-phosphogluconolactonase.
 
  
 0.997
RN08_2731
Ribose-5-phosphate isomerase B.
    
 0.992
RN08_1259
Glucose-6-phosphate 1-dehydrogenase.
 
 0.989
RN08_1574
Ribulose-phosphate 3-epimerase; Overlaps another CDS with the same product name.
    
 0.966
RN08_1575
Ribulose-phosphate 3-epimerase; Overlaps another CDS with the same product name.
    
 0.966
RN08_1618
Glucose-6-phosphate 1-dehydrogenase.
 
 0.954
RN08_2049
6-phosphogluconate dehydrogenase.
  
  
 
0.918
RN08_0004
Hypothetical protein.
     
 0.639
RN08_1257
Hypothetical protein.
       0.552
RN08_1258
Hypothetical protein.
       0.552
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.