STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1278Hypothetical protein. (166 aa)    
Predicted Functional Partners:
RN08_1277
Oxidoreductase.
 
  
 0.984
RN08_1839
Chalcone synthase; Overlaps another CDS with the same product name.
 
  
 0.897
RN08_1840
Chalcone synthase; Overlaps another CDS with the same product name.
 
  
 0.897
RN08_1846
Chalcone synthase.
 
  
 0.897
RN08_1537
Alpha-pyrone synthesis polyketide synthase-like protein.
 
  
 0.874
RN08_1279
Integral membrane protein.
       0.773
RN08_1280
Integral membrane protein.
       0.568
RN08_3068
Alanine-rich oxidoreductase.
     
 0.539
RN08_2398
Hypothetical protein.
      
 0.520
RN08_0226
HTH-type transcriptional regulator.
      
 0.518
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.