STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1283alpha-methylacyl-CoA racemase. (360 aa)    
Predicted Functional Partners:
RN08_1284
Oxidoreductase.
 
 
 0.950
RN08_0951
fatty-acid-CoA racemase.
  
  
 
0.905
RN08_1282
enoyl-CoA hydratase EchA10.
  
 
 0.837
RN08_0137
oxalyl-CoA decarboxylase OxcA.
 
 
 0.695
RN08_2269
Polyketide synthase.
  
 0.682
RN08_2025
Acetolactate synthase large subunit IlvG.
 
 
 0.636
RN08_2149
acyl-CoA dehydrogenase FadE18.
 
 
 0.633
RN08_0169
Short-chain type dehydrogenase/reductase.
  
 
 0.617
RN08_1669
Hypothetical protein.
    
 0.616
RN08_1673
methylmalonyl-CoA mutase small subunit.
    
 0.616
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.