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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1322Ferredoxin FdxC. (108 aa)    
Predicted Functional Partners:
RN08_3422
NADPH-ferredoxin reductase FprA.
 
 0.910
RN08_1323
Aminotransferase.
    
 0.907
RN08_2721
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.900
RN08_0078
Isocitrate dehydrogenase.
  
 
 0.823
RN08_1320
NADPH dependent 2,4-dienoyl-CoA reductase FadH.
  
 0.823
RN08_0920
acyl-ACP desaturase DesA.
   
  
 0.753
RN08_0459
Phosphate acetyltransferase.
    
 0.737
RN08_1439
Bifunctional sulfate adenyltransferase subunit 1 CysN/adenylylsulfate kinase CysC.
    
 0.734
RN08_1321
Hypothetical protein.
       0.711
RN08_1229
acyl-ACP desaturase DesA.
   
  
 0.693
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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