STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1348Hypothetical protein. (187 aa)    
Predicted Functional Partners:
RN08_1349
fatty-acid--CoA ligase FadD6.
  
    0.828
RN08_1351
Glucosyl-3-phosphoglycerate synthase.
 
   
 0.815
RN08_3012
tRNA delta(2)-isopentenylpyrophosphate transferase.
     
 0.795
RN08_1347
Hypothetical protein.
       0.776
RN08_3018
(dimethylallyl)adenosine tRNA methylthiotransferase.
     
 0.722
RN08_3621
Hypothetical protein.
     
 0.704
RN08_1350
Dihydropteroate synthase.
       0.700
RN08_2763
Hypothetical protein.
      
 0.530
RN08_1346
Hypothetical protein.
       0.523
RN08_1353
DNA-3-methyladenine glycosylase I TagA.
       0.483
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.