STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1380Trehalose ABC transporter substrate-binding lipoprotein LpqY. (435 aa)    
Predicted Functional Partners:
RN08_1383
Sugar ABC transporter permease SugB.
 
 0.999
RN08_1382
Sugar ABC transporter permease SugA.
 
 0.995
RN08_1384
Sugar ABC transporter ATP-binding protein SugC.
 
 0.991
RN08_3124
Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.
  
 0.880
RN08_2569
Sugar ABC transporter permease UspA.
 
 0.878
RN08_2570
Sugar ABC transporter permease UspB.
 
 0.864
RN08_2257
Sugar ABC transporter ATP-binding protein.
  
 0.860
RN08_2258
Sugar ABC transporter permease.
 
 0.859
RN08_3127
Sn-glycerol-3-phosphate ABC transporter permease UgpA.
  
 0.859
RN08_2260
Sugar ABC transporter permease.
 
 0.856
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.