STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1389Ribonuclease VapC33. (143 aa)    
Predicted Functional Partners:
RN08_1388
Antitoxin VapB33.
  
    0.879
RN08_4075
Ribonuclease VapC48.
  
     0.774
RN08_0834
Antitoxin VapB31.
   
 
 0.702
RN08_1250
Ribonuclease VapC32.
 
   
 0.695
RN08_1386
Malate dehydrogenase; Overlaps another CDS with the same product name.
       0.620
RN08_1387
Malate dehydrogenase; Overlaps another CDS with the same product name.
       0.620
RN08_0667
Ribonuclease VapC4.
 
   
 0.607
RN08_0654
Ribonuclease VapC26.
  
   
 0.520
RN08_0682
Ribonuclease VapC28.
      
 0.520
RN08_2825
Ribonuclease VapC19.
 
   
 0.516
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.