STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1406Oxidoreductase; Overlaps another CDS with the same product name. (361 aa)    
Predicted Functional Partners:
RN08_1405
Oxidoreductase; Overlaps another CDS with the same product name.
     0.994
RN08_2041
Malate synthase.
  
 
 0.939
RN08_2526
FAD-binding protein.
  
  
 
0.925
RN08_2479
Protein tyrosine kinase transcriptional regulator PtkA.
    
 0.913
RN08_0520
Isocitrate lyase.
     
 0.903
RN08_2127
Isocitrate lyase AceAb.
     
 0.903
RN08_1407
Multidrug-efflux transporter.
  
    0.825
RN08_2116
D-amino acid oxidase.
     
 0.807
RN08_3010
GTP-binding protein HflX.
  
    0.723
RN08_0379
Aspartate aminotransferase.
  
  
 0.646
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.