STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1559Monooxygenase. (492 aa)    
Predicted Functional Partners:
RN08_1560
Cytochrome P450 Cyp132.
  
 
 0.972
RN08_1561
HTH-type transcriptional regulator.
 
     0.814
RN08_1565
Carboxylesterase NlhH.
 
 
 0.710
RN08_3412
Triacylglycerol lipase Lip.
 
 
 0.561
RN08_3396
Acetyl-hydrolase LipR.
 
 0.545
RN08_2644
Acetyl hydrolase.
 
 0.518
RN08_1393
Short-chain type dehydrogenase/reductase.
 
 
 0.494
RN08_1567
Membrane protein.
 
     0.479
RN08_3397
Oxidoreductase SadH.
 
 
 0.474
RN08_3278
Lipase/esterase LipN.
 
 0.466
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.