STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1590Transcriptional regulator WhiA. (325 aa)    
Predicted Functional Partners:
RN08_1589
Hypothetical protein.
 
  
 0.960
RN08_1588
Hypothetical protein.
 
  
 0.942
RN08_1609
Protein-export membrane protein SecG.
 
   
 0.897
RN08_1587
Excinuclease ABC subunit UvrC.
       0.874
RN08_3596
2-phospho-L-lactate transferase.
  
  
 0.863
RN08_3189
Tyrosine recombinase XerC.
  
    0.767
RN08_2984
Hypothetical protein.
  
     0.766
RN08_3595
Transcriptional regulator WhiB2.
  
   
 0.765
RN08_2035
HTH-type transcriptional regulator.
  
   
 0.745
RN08_1603
Glyceraldehyde 3-phosphate dehydrogenase.
     
 0.744
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.